Version 2.1 Latest

Release summary

14th December 2022

The latest release builds on the previous version to bring new sets from MirGeneDB (high confidence miRNAs), isomiRdb and the human cellular microRNAome which includes 196 different cell types.

Integrated data
The following data sets and databases have been incorporated or updated:
Database / Resource Version Retrieval date #Categories #Supported species in miEAA Reference
MiRGeneDB 2.1 September 2022 16 8 doi.org/10.1093/nar/gkab1101
isomiRdb 1.0 October 2022 4 1 doi.org/10.1093/nar/gkac884
Human cellular microRNAome 1.0 October 2022 784 4 doi.org/10.1093/gigascience/giac083
MNDR 3.1 March 2023 3,309 4 doi:10.1093/nar/gkaa707
Gene Ontology N/A March 2023 40,465 10 doi:10.1093/nar/gky1055
KEGG N/A March 2023 1,060 5 doi:10.1093/nar/gky962
RNALocate 2.0 March 2023 80 6 doi:10.1093/nar/gkw728
miRTarBase 9.0 March 2023 23,597 10 doi:10.1093/nar/gkz896
Browser compatibility
Our web server supports a variety of common operating systems and browsers:
OS Version Chrome Firefox Microsoft Edge Safari Opera
Linux Manjaro (64 bit) 18.0.0 79.0.3945.79 71.0 N/A N/A Not tested
macOS Mojave 10.14.6 79.0.3945.79 71.0 N/A 13.0.4 65.0.3467.72
Windows 10 79.0.3945.88 71.0 38.14393.0.0 N/A 65.03467.78

For the best experience we recommend to use either Chrome or Firefox.

Version 2.0

Release summary

11th December 2019

The second major release brings support for new species and plotting features, substantial updates to internal data sets, and a refreshed design.

Tutorial Downloads
Integrated data
The following data sets and databases have been incorporated:
Database / Resource Version Retrieval date #Categories #Supported species in miEAA Reference
miRBase 22.1 March 2020 12,027 10 doi:10.1093/nar/gky1141
KEGG N/A March 2020 1,020 5 doi:10.1093/nar/gky962
Gene Ontology N/A March 2020 38,058 10 doi:10.1093/nar/gky1055
miRPathDB 2.0 October 2019 13,315 2 doi:10.1093/nar/gkz1022
TissueAtlas 1.0 October 2019 31 1 doi:10.1093/nar/gkw116
HMDD 3.0 October 2019 860 1 doi:10.1093/nar/gky1010
miRTarBase 8.0 March 2020 23,514 10 doi:10.1093/nar/gkz896
miRWalk 2.0 October 2019 14,405 3 doi:10.1038/nmeth.3485
TransmiR 2.0 March 2020 1,754 5 doi:10.1093/nar/gky1023
NPInter 4.0 March 2020 26,727 10 doi:10.1093/nar/gkz969
MNDR 2.0 March 2020 2,061 4 doi:10.1093/nar/gkx1025
RNALocate 1.0 March 2020 54 6 doi:10.1093/nar/gkw728
miRandola 1.0 March 2020 12 4 doi:10.1093/nar/gkx854
TAM 2.0 October 2019 164 1 doi:10.1093/nar/gky509
SM2miR 3.0 March 2020 293 6 doi:10.1093/bioinformatics/bts698
Selected publications N/A March 2020 230 3 See downloads
Features & changes
  • Upgraded miRNA and precursor data set to miRBase v22.1
  • Updated miRBase version converter
  • Updated miRNA to precursor converter
  • Added species: Mus musculus (mmu), Rattus norvegicus (rno), Arabidopsis thaliana (ath), Bos taurus (bta), Caenorhabditis elegans (cel), Drosophila melanogaster (dme), Danio rerio (dre), Gallus gallus (gga), and Sus scrofa (ssc)
  • Incorporated more external databases and selected publications (See Integrated data table)
  • Updated external databases contained in previous v1.3
  • Implemented public web application program interface (API)
  • New down-stream visualization features:
    • Category wordcloud
    • Category-to-miRNA heatmap
    • Background enrichment distribution plots (GSEA only)
  • New parameters for enrichment analyses to support more customization:
    • q-value in addition to p-value
    • Four additional p-value correction methods
    • Option to adjust databases either independently or with pooled p-values
  • New website design
  • Dozens of usage and performance improvements

Version 1.3

Release summary

13th December 2015

This is a minor release containing many improvements to the backend structure and various interface tweaks.