Version 2.0 Latest

Release summary

11th December 2019

The second major release brings support for new species and plotting features, substantial updates to internal data sets, and a refreshed design.

Tutorial Downloads
Integrated data
The following data sets and databases have been incorporated:
Database / Resource Version Retrieval date #Categories #Supported species in miEAA Reference
miRBase 22.1 March 2020 12,027 10 doi:10.1093/nar/gky1141
KEGG N/A March 2020 1,020 5 doi:10.1093/nar/gky962
Gene Ontology N/A March 2020 38,058 10 doi:10.1093/nar/gky1055
miRPathDB 2.0 October 2019 13,315 2 doi:10.1093/nar/gkz1022
TissueAtlas 1.0 October 2019 31 1 doi:10.1093/nar/gkw116
HMDD 3.0 October 2019 860 1 doi:10.1093/nar/gky1010
miRTarBase 8.0 March 2020 23,514 10 doi:10.1093/nar/gkz896
miRWalk 2.0 October 2019 14,405 3 doi:10.1038/nmeth.3485
TransmiR 2.0 March 2020 1,754 5 doi:10.1093/nar/gky1023
NPInter 4.0 March 2020 26,727 10 doi:10.1093/nar/gkz969
MNDR 2.0 March 2020 2,061 4 doi:10.1093/nar/gkx1025
RNALocate 1.0 March 2020 54 6 doi:10.1093/nar/gkw728
miRandola 1.0 March 2020 12 4 doi:10.1093/nar/gkx854
TAM 2.0 October 2019 164 1 doi:10.1093/nar/gky509
SM2miR 3.0 March 2020 293 6 doi:10.1093/bioinformatics/bts698
Selected publications N/A March 2020 230 3 See downloads
Features & changes
  • Upgraded miRNA and precursor data set to miRBase v22.1
  • Updated miRBase version converter
  • Updated miRNA to precursor converter
  • Added species: Mus musculus (mmu), Rattus norvegicus (rno), Arabidopsis thaliana (ath), Bos taurus (bta), Caenorhabditis elegans (cel), Drosophila melanogaster (dme), Danio rerio (dre), Gallus gallus (gga), and Sus scrofa (ssc)
  • Incorporated more external databases and selected publications (See Integrated data table)
  • Updated external databases contained in previous v1.3
  • Implemented public web application program interface (API)
  • New down-stream visualization features:
    • Category wordcloud
    • Category-to-miRNA heatmap
    • Background enrichment distribution plots (GSEA only)
  • New parameters for enrichment analyses to support more customization:
    • q-value in addition to p-value
    • Four additional p-value correction methods
    • Option to adjust databases either independently or with pooled p-values
  • New website design
  • Dozens of usage and performance improvements
Browser compatibility
Our web server supports a variety of common operating systems and browsers:
OS Version Chrome Firefox Microsoft Edge Safari Opera
Linux Manjaro (64 bit) 18.0.0 79.0.3945.79 71.0 N/A N/A Not tested
macOS Mojave 10.14.6 79.0.3945.79 71.0 N/A 13.0.4 65.0.3467.72
Windows 10 79.0.3945.88 71.0 38.14393.0.0 N/A 65.03467.78

For the best experience we recommend to use either Chrome or Firefox.


Version 1.3

Release summary

13th December 2015

This is a minor release containing many improvements to the backend structure and various interface tweaks.